Methods: VeroE6 cell line

Samples: VeroE6 cells

Species: Chlorocebus sabaeus

Cell Line Origin: Kidney epithelial cells

Techniques: RNA-seq

Data processing for CellPalmSeq: The reference transcriptome was acquired from The RNAseq reads were downloaded from the Gene Expression Omnibus ( For each sample, RNAseq expression values (TPM) at the gene level were obtained using kallisto (Bray et al., 2016) with the appropriate reference transcriptome by summing the TPM values of individual isoforms.

Heatmap units: Transcripts per million (TPM)

GEOSample IDTreatmentCell_sourcePMIDYear
Dataset 1: GSE153940GSM4658803; GSM4658804; GSM4658805Mock infectedATCC (CRL-1586)327075732020
Dataset 2: GSE154784GSM4679562; GSM4679563Mock infectedATCC (CRL-1586)331474442020
Dataset 3: GSE158050GSM4787236; GSM4787237; GSM4787238NoneATCC334230672020
Dataset 4: GSE165955GSM5059236; GSM5059237; GSM5059238Mock infected + DMSO treatedATCC (CRL-1586)347097072021
Dataset 5: GSE167341GSM5102492; GSM5102494; GSM5102496NoneATCC337432112021
Dataset 6: GSE178942GSM5401607; GSM5401608; GSM5401609NoneATCC (CRL-1586)347978992021