Methods: MDCK cell line

Samples: MDCK cells

Species: Canis lupus familiaris

Cell Line Origin: Kidney epithelial cells

Techniques: RNA-seq

Data processing for CellPalmSeq: The reference transcriptome was acquired from The RNAseq reads were downloaded from the Gene Expression Omnibus ( For each sample, RNAseq expression values (TPM) at the gene level were obtained using kallisto (Bray et al., 2016) with the appropriate reference transcriptome by summing the TPM values of individual isoforms.

Heatmap units: Transcripts per million (TPM)

GEOSample IDsTreatmentCell_sourcePMIDYear
Dataset 1: GSE110301GSM2985554; GSM2985555; GSM2985556; GSM2985557; GSM2985558; GSM2985559; GSM2985560; GSM2985561; GSM2985562; GSM2985563; GSM2985564; GSM2985565NoneECACC, Netherlands303895392018
Dataset 2: GSE135441GSM4009056; GSM4009057; GSM4009058NoneNIH Repository, NIAID331222862020
Dataset 3: GSE175784GSM5346314; GSM5346315; GSM5346316; GSM5346317NoneAcademic source. Originally obtained from ATCC336214922021