Methods: CHO cell line

Samples: CHO cells

Species: Cricetulus griseus

Cell Line Origin: Chinese hamster ovary epithelial cell

Techniques: RNA-seq

Data processing for CellPalmSeq: The reference transcriptome was acquired from The RNAseq reads were downloaded from the Gene Expression Omnibus ( For each sample, RNAseq expression values (TPM) at the gene level were obtained using kallisto (Bray et al., 2016) with the appropriate reference transcriptome by summing the TPM values of individual isoforms.

Heatmap units: Transcripts per million (TPM)

GEOSample IDTreatmentCell_sourcePMIDYearStrain
Dataset 1: GSE77800GSM2059626; GSM2059627; GSM2059628; GSM2059629NoneLife Technologies (A11557-01)278838902016CHO-S
Dataset 2: GSE157729GSM4774048; GSM4774049Empty vector transfection controlGibco (A29127)353011232022ExpiCHO-S
Dataset 3: GSE100908GSM2696081; GSM2696082; GSM2696083NoneSigma (CHOGS-1VL)293163302018CHOZN
Dataset 4: GSE199531GSM5974752; GSM5974753; GSM5974754; GSM5974755NoneATCC (CCL-61)356259092022CHO-K1
Dataset 5: GSE75521GSM1958459; GSM1958460NoneATCC (CCL-61)280740242016CHO-K1